A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci

N Rothman, M Garcia-Closas, N Chatterjee, N Malats… - Nature …, 2010 - nature.com
Nature genetics, 2010nature.com
We conducted a multi-stage, genome-wide association study of bladder cancer with a
primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of
European descent from five studies followed by a replication strategy, which included 8,382
cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new
regions associated with bladder cancer on chromosomes 22q13. 1, 19q12 and 2q37. 1:
rs1014971,(P= 8× 10− 12) maps to a non-genic region of chromosome 22q13. 1, rs8102137 …
Abstract
We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10−12) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10−11) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10−7) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10−11) and a tag SNP for NAT2 acetylation status (P = 4 × 10−11), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis.
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